Clin Osteol 2025; 30(4): 196-201 | DOI: 10.36290/clo.2025.032
Gut microbiome and bone: a review of current knowledgeMain theme
- Interní klinika Fakultní nemocnice Královské Vinohrady a 3. lékařské fakulty Univerzity Karlovy v Praze
Bone metabolism is a dynamic and complex process involving a continuous cycle of bone resorption and formation. An imbalance between these processes leads to the development of osteoporosis - the most common metabolic bone disease - characterized by decreased bone mass and an increased risk of fractures, as well as other pathological conditions. While bone metabolism has traditionally been associated primarily with hormonal regulation and mechanical loading, growing evidence points to a key role of the gut microbiota in the regulation of mineralization and the maintenance of bone integrity. The microbiome influences not only intestinal homeostasis but, through its metabolites - particularly short-chain fatty acids (SCFAs) - also affects a wide range of systemic processes, including bone remodeling. Major mechanisms of action include modulation of intestinal barrier permeability, effects on mineral absorption (e.g. calcium and magnesium), and immunomodulatory effects. Understanding the interactions between nutrition, the microbiota, and bone health opens new therapeutic possibilities and offers potential for the development of personalized interventions aimed at the prevention and treatment of osteoporosis and related disorders.
Keywords: microbiome, bone metabolism, intestinal barrier, osteoporosis, short-chain fatty acids, immune system.
Published: December 1, 2025 Show citation
References
- Rastelli M, Knauf C, Cani PD. Gut microbes and health: a focus on the mechanisms linking microbes, obesity, and related disorders. Obesity. 2018;26:792 800.
Go to original source...
Go to PubMed... - Berg G, Rybakova D, Fischer D, et al. Microbiome definition re visited: old concepts and new challenges. Microbiome. 2020;8.
Go to original source...
Go to PubMed... - Wen L, Duffy A. Factors influencing the gut microbiota, inflammation, and type 2 diabetes. J Nutr. 2017;147:1468S 1475S.
Go to original source...
Go to PubMed... - Lynch SV, Pedersen O. The human intestinal microbiome in health and disease. N Engl J Med. 2016;375:2369 2379.
Go to original source...
Go to PubMed... - Hwang D, Chong E, Li Y, et al. Deciphering the gut microbiome's metabolic code: pathways to bone health and novel therapeutic avenues. Front Endocrinol (Lausanne). 2025;16.
Go to original source...
Go to PubMed... - Al Rashidi HE. Gut microbiota and immunity relevance in eubiosis and dysbiosis. Saudi J Biol Sci. 2021.
Go to original source...
Go to PubMed... - Khanna S. Microbiota replacement therapies: innovation in gastrointestinal care. Clin Pharmacol Ther. 2018;103:102 111.
Go to original source...
Go to PubMed... - Peng J, Yu XJ, Yu LL, et al. The influence of gut microbiome on bone health and related dietary strategies against bone dysfunctions. Food Res Int. 2021;144.
Go to original source...
Go to PubMed... - Jones D, Glimcher LH, Aliprantis AO. Osteoimmunology at the nexus of arthritis, osteoporosis, cancer, and infection. J Clin Invest. 2011;121:2534 2542.
Go to original source...
Go to PubMed... - de Sire A, de Sire R, Curci C, et al. Role of dietary supplements and probiotics in modulating microbiota and bone health: the gut bone axis. Cells. 2022;11.
Go to original source...
Go to PubMed... - Lucas S, Omata Y, Hofmann J, et al. Short chain fatty acids regulate systemic bone mass and protect from pathological bone loss. Nat Commun. 2018;9.
Go to original source...
Go to PubMed... - Akinsuyi OS, Roesch LFW. Meta analysis reveals compositional and functional microbial changes associated with osteoporosis. Microbiol Spectr. 2023;11.
Go to original source...
Go to PubMed... - Jadhav VV, Han J, Fasina Y, et al. Connecting gut microbiomes and short chain fatty acids with the serotonergic system and behavior in Gallus gallus and other avian species. Front Physiol. 2022;13.
Go to original source...
Go to PubMed... - Xiang T, Deng Z, Yang C, et al. Bile acid metabolism regulatory network orchestrates bone homeostasis. Pharmacol Res. 2023;196.
Go to original source...
Go to PubMed... - Yamamoto EA, Jørgensen TN. Relationships between vitamin D, gut microbiome, and systemic autoimmunity. Front Immunol. 2020;10.
Go to original source...
Go to PubMed... - Blanton LV, Charbonneau MR, Salih T, et al. Gut bacteria that prevent growth impairments transmitted by microbiota from malnourished children. Science. 2016;351.
Go to original source...
Go to PubMed... - Szaleniec M, Wojtkiewicz AM, Bernhardt R, et al. Bacterial steroid hydroxylases: enzyme classes, their functions and comparison of their catalytic mechanisms. Appl Microbiol Biotechnol. 2018;102:8153 8171.
Go to original source...
Go to PubMed... - Fukushima A, Aizaki Y, Sakuma K. Short chain fatty acids induce intestinal transient receptor potential vanilloid type 6 expression in rats and Caco 2 cells. J Nutr. 2009;139:20 25.
Go to original source...
Go to PubMed... - Barone M, D'Amico F, Brigidi P, et al. Gut microbiome-micronutrient interaction: the key to controlling the bioavailability of minerals and vitamins?. BioFactors. 2022;48:307 314.
Go to original source...
Go to PubMed... - Lui JC. Gut microbiota in regulation of childhood bone growth. Exp Physiol. 2024;109:662 671.
Go to original source...
Go to PubMed... - Kverka M, Tlaskalova Hogenova H. Two faces of microbiota in inflammatory and autoimmune diseases: triggers and drugs. APMIS. 2013;121:403 421.
Go to original source...
Go to PubMed... - Beam A, Clinger E, Hao L. Effect of diet and dietary components on the composition of the gut microbiota. Nutrients. 2021;13.
Go to original source...
Go to PubMed... - Chen L, Ruan G, Cheng Y, et al. The role of Th17 cells in inflammatory bowel disease and the research progress. Front Immunol. 2023;13.
Go to original source...
Go to PubMed... - Ciucci T, Ibáñez L, Boucoiran A, et al. Bone marrow Th17 TNF α cells induce osteoclast differentiation, and link bone destruction to IBD. Gut. 2015;1072 1081.
Go to original source...
Go to PubMed... - Sjögren K, Engdahl C, Henning P, et al. The gut microbiota regulates bone mass in mice. J Bone Miner Res. 2012;27:1357 1367.
Go to original source...
Go to PubMed... - Mu Q, Kirby J, Reilly CM, et al. Leaky gut as a danger signal for autoimmune diseases. Front Immunol. 2017;8.
Go to original source...
Go to PubMed... - Usuda H, Okamoto T, Wada K. Leaky gut: effect of dietary fiber and fats on microbiome and intestinal barrier. Int J Mol Sci. 2021;22.
Go to original source...
Go to PubMed... - Fuhrman BJAssociations of the fecal microbiome with urinary estrogens and estrogen metabolites in postmenopausal women. J Clin Endocrinol Metab. 2014;99:4632 4640.
- Wang J, Wang Y, Gao W, et al. Diversity analysis of gut microbiota in osteoporosis and osteopenia patients. PeerJ. 2017;2017.
Go to original source...
Go to PubMed... - Yu J, Cao G, Yuan S, et al. Probiotic supplements and bone health in postmenopausal women: a meta analysis of randomised controlled trials. BMJ Open. 2021;11.
Go to original source...
Go to PubMed... - Collins FL, Rios Arce ND, Atkinson S, et al. Temporal and regional intestinal changes in permeability, tight junction, and cytokine gene expression following ovariectomy induced estrogen deficiency. Physiol Rep. 2017;5.
Go to original source...
Go to PubMed... - Wang Z, Chen K, Wu C, et al. An emerging role of Prevotella histicola on estrogen deficiency-induced bone loss through the gut microbiota-bone axis in postmenopausal women and in ovariectomized mice. Am J Clin Nutr. 2021;114:1304 1313.
Go to original source...
Go to PubMed... - Tu Y, Kuang X, Zhang L, et al. The associations of gut microbiota, endocrine system and bone metabolism. Front Microbiol. 2023;14.
Go to original source...
Go to PubMed... - Zheng XQ, Wang DB, Jiang YR, et al. Gut microbiota and microbial metabolites for osteoporosis. Gut Microbes. 2025;17.
Go to original source...
Go to PubMed... - Schepper JD, Collins F, Rios Arce ND, et al. Involvement of the gut microbiota and barrier function in glucocorticoid induced osteoporosis. J Bone Miner Res. 2020;35:801-820.
Go to original source...
Go to PubMed...
